< Back to small molecule database

US20230287003, Example 8n

E3L030794
Internal ID: BDB030794
Activity data available Local docking-ready structure
Dock with P41182
Structure
/e3_file/ligand_db/generated/BDB030794/BDB030794.sdf
Basic Properties
Compound ID
E3L030794
Internal ID
BDB030794
Molecular formula
C26H29ClN6O4
Molecular weight
525.009000
Exact mass
524.193881
XLogP
3.7000
TPSA
110.6100
HBA / HBD
9 / 2
Rotatable bonds
4
Heavy atoms / rings
37 / 6
Activity summary
IC50 unknown 646.00000000 nM
1 activity record(s) imported
InChIKey
YMIQPGWJOPZOOI-BIENJYKASA-N
SMILES
C[C@@H]1CN(c2ncc(Cl)c(Nc3ccc4c(c3)c3c(c(=O)n4C)C(=O)OC[C@H](C4CC4)N3)n2)C[C@H](C)O1
Aliases
BDBM618547 (preferred) US20230287003, Example 8n (source_name) BDBM618547 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P41182 BCL6;BCL5;LAZ3;ZBTB27;ZNF51
B-cell lymphoma 6 protein		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM618547 medium
; target=B-cell lymphoma 6 protein
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM618547 Open - 10.7270/Q2RJ4PKC
PubChem CID146189012 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready C[C@@H]1CN(c2ncc(Cl)c(Nc3ccc4c(c3)c3c(c(=O)n4C)C(=O)OC[C@H](C4CC4)N3)n2)C[C@H](C)O1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB030794/BDB030794.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB030794/BDB030794.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB030794/BDB030794.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB030794/BDB030794.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB030794/BDB030794.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
B-cell lymphoma 6 protein
P41182
E3 ligase component 		BindingDB:BDBM618547 IC50 646 nM Moderate DOI: 10.7270/Q2RJ4PKC 1