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US20230287003, Example 12t

E3L030819
Internal ID: BDB030819
Activity data available Local docking-ready structure
Dock with P41182
Structure
/e3_file/ligand_db/generated/BDB030819/BDB030819.sdf
Basic Properties
Compound ID
E3L030819
Internal ID
BDB030819
Molecular formula
C25H27ClF2N6O3
Molecular weight
532.979000
Exact mass
532.180123
XLogP
4.1688
TPSA
93.5400
HBA / HBD
8 / 2
Rotatable bonds
4
Heavy atoms / rings
37 / 6
Activity summary
IC50 unknown 3.47000000 nM
1 activity record(s) imported
InChIKey
VRIQLBRKCSERAI-ZSEKCTLFSA-N
SMILES
C[C@H]1CN(c2ncc(Cl)c(Nc3ccc4c(c3)c3c(c(=O)n4C)OCC(F)(F)[C@H](C4CC4)N3)n2)CCO1
Aliases
BDBM618576 (preferred) US20230287003, Example 12t (source_name) BDBM618576 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P41182 BCL6;BCL5;LAZ3;ZBTB27;ZNF51
B-cell lymphoma 6 protein
reported_binder bindingdb_reported Yes No low BindingDB:BDBM618576 medium
; target=B-cell lymphoma 6 protein
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM618576 Open - 10.7270/Q2RJ4PKC
PubChem CID146188909 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready C[C@H]1CN(c2ncc(Cl)c(Nc3ccc4c(c3)c3c(c(=O)n4C)OCC(F)(F)[C@H](C4CC4)N3)n2)CCO1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB030819/BDB030819.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB030819/BDB030819.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB030819/BDB030819.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB030819/BDB030819.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB030819/BDB030819.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
B-cell lymphoma 6 protein
P41182
E3 ligase component
BindingDB:BDBM618576 IC50 3.47 nM Very high DOI: 10.7270/Q2RJ4PKC 1