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BDBM619545

E3L031003
Internal ID: BDB031003
Activity data available Local docking-ready structure
Dock with P51948
Structure
/e3_file/ligand_db/generated/BDB031003/BDB031003.sdf
Basic Properties
Compound ID
E3L031003
Internal ID
BDB031003
Molecular formula
C26H32F3N6O3P
Molecular weight
564.549000
Exact mass
564.222560
XLogP
5.5467
TPSA
121.0300
HBA / HBD
7 / 4
Rotatable bonds
5
Heavy atoms / rings
39 / 5
Activity summary
IC50 < 50.00000000 nM
1 activity record(s) imported
InChIKey
NYFUWVMIZFQUBX-HNNXBMFYSA-N
SMILES
COC(=O)Nc1ccc2c(-c3nc(N[C@H]4CCC(C)(C)NC4)ncc3C(F)(F)F)c[nH]c2c1P1(=O)CCCC1
Aliases
BDBM619545 (preferred) methyl N-[3-[2-[[(3S)-6,6-dimethylpiperidin-3-yl]amino]-5-(trifluoromethyl)pyrimidin-4-yl]-7-(1-oxo-1lambda5-phospholan-1-yl)-1H-indol-6-yl]carbamate (source_name) BDBM619545 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P51948 MNAT1;CAP35;MAT1;RNF66
CDK-activating kinase assembly factor MAT1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM619545 medium
; target=Cyclin-H
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM619545 Open - 10.7270/Q2TB1C2B
PubChem CID169058704 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready COC(=O)Nc1ccc2c(-c3nc(N[C@H]4CCC(C)(C)NC4)ncc3C(F)(F)F)c[nH]c2c1P1(=O)CCCC1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB031003/BDB031003.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB031003/BDB031003.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB031003/BDB031003.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB031003/BDB031003.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB031003/BDB031003.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Cyclin-H
P51948
E3 ligase component 		BindingDB:BDBM619545 IC50 <50 nM High DOI: 10.7270/Q2TB1C2B 1