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US20230303553, Example 26

E3L031028
Internal ID: BDB031028
Activity data available Local docking-ready structure
Dock with Q92630
Structure
/e3_file/ligand_db/generated/BDB031028/BDB031028.sdf
Basic Properties
Compound ID
E3L031028
Internal ID
BDB031028
Molecular formula
C30H35FN8O2S
Molecular weight
590.729000
Exact mass
590.258772
XLogP
6.4426
TPSA
108.4000
HBA / HBD
10 / 2
Rotatable bonds
6
Heavy atoms / rings
42 / 6
Activity summary
IC50 > 10000.00000000 nM
1 activity record(s) imported
InChIKey
XWBPXBNSMOXMLC-UHFFFAOYSA-N
SMILES
CC(C)(C)OC(=O)N1CCN(c2ccc(Nc3ncc(F)c(-c4ccc5nc(NC6CCCC6)sc5c4)n3)nc2)CC1
Aliases
BDBM621020 (preferred) US20230303553, Example 26 (source_name) BDBM621020 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q92630 DYRK2
Dual specificity tyrosine-phosphorylation-regulated kinase 2		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM621020 medium
; target=Dual specificity tyrosine-phosphorylation-regulated kinase 2
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM621020 Open - 10.1021/acs.jmedchem.3c01626 PMID: 38033250
PubChem CID169073887 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CC(C)(C)OC(=O)N1CCN(c2ccc(Nc3ncc(F)c(-c4ccc5nc(NC6CCCC6)sc5c4)n3)nc2)CC1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB031028/BDB031028.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB031028/BDB031028.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB031028/BDB031028.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB031028/BDB031028.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB031028/BDB031028.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Dual specificity tyrosine-phosphorylation-regulated kinase 2
Q92630
E3 ligase component 		BindingDB:BDBM621020 IC50 >10000 nM Low DOI: 10.1021/acs.jmedchem.3c01626
PMID: 38033250 		1