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US20230312542, Example 17

E3L031137
Internal ID: BDB031137
Activity data available Local docking-ready structure
Dock with P40337
Structure
/e3_file/ligand_db/generated/BDB031137/BDB031137.sdf
Basic Properties
Compound ID
E3L031137
Internal ID
BDB031137
Molecular formula
C24H32FN5O4
Molecular weight
473.549000
Exact mass
473.243833
XLogP
2.0061
TPSA
118.6300
HBA / HBD
5 / 3
Rotatable bonds
6
Heavy atoms / rings
34 / 3
Activity summary
Kd unknown 5500.00000000 nM
1 activity record(s) imported
InChIKey
RBRBALPLQJUNLC-LSTHTHJFSA-N
SMILES
CC(=O)N[C@H](C(=O)N1C[C@H](O)C[C@H]1c1nc(C(=O)N(C)Cc2ccccc2F)c[nH]1)C(C)(C)C
Aliases
BDBM621979 (preferred) US20230312542, Example 17 (source_name) BDBM621979 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P40337 VHL
von Hippel-Lindau disease tumor suppressor		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM621979 medium
; target=von Hippel-Lindau disease tumor suppressor
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM621979 Open - 10.7270/Q25H7MF8
PubChem CID156873422 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CC(=O)N[C@H](C(=O)N1C[C@H](O)C[C@H]1c1nc(C(=O)N(C)Cc2ccccc2F)c[nH]1)C(C)(C)C keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB031137/BDB031137.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB031137/BDB031137.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB031137/BDB031137.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB031137/BDB031137.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB031137/BDB031137.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
von Hippel-Lindau disease tumor suppressor
P40337
E3 ligase component 		BindingDB:BDBM621979 Kd 5500 nM Low DOI: 10.7270/Q25H7MF8 1