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US20230312542, Example 144

E3L031187
Internal ID: BDB031187
Activity data available Local docking-ready structure
Dock with P40337
Structure
/e3_file/ligand_db/generated/BDB031187/BDB031187.sdf
Basic Properties
Compound ID
E3L031187
Internal ID
BDB031187
Molecular formula
C28H36N6O5
Molecular weight
536.633000
Exact mass
536.274718
XLogP
3.2036
TPSA
137.6800
HBA / HBD
8 / 2
Rotatable bonds
7
Heavy atoms / rings
39 / 5
Activity summary
Kd unknown 5500.00000000 nM
1 activity record(s) imported
InChIKey
PFWQPQBISOYUHO-TUCIMNAFSA-N
SMILES
COc1cc(C(C(=O)N2C[C@H](O)C[C@H]2c2nc(C(=O)N3CCC(c4ccc(C)cn4)CC3)c[nH]2)C(C)C)on1
Aliases
BDBM622029 (preferred) US20230312542, Example 144 (source_name) BDBM622029 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P40337 VHL
von Hippel-Lindau disease tumor suppressor		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM622029 medium
; target=von Hippel-Lindau disease tumor suppressor
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM622029 Open - 10.7270/Q25H7MF8
PubChem CID156873244 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready COc1cc(C(C(=O)N2C[C@H](O)C[C@H]2c2nc(C(=O)N3CCC(c4ccc(C)cn4)CC3)c[nH]2)C(C)C)on1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB031187/BDB031187.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB031187/BDB031187.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB031187/BDB031187.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB031187/BDB031187.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB031187/BDB031187.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
von Hippel-Lindau disease tumor suppressor
P40337
E3 ligase component 		BindingDB:BDBM622029 Kd 5500 nM Low DOI: 10.7270/Q25H7MF8 1