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US20230312542, Example 162

E3L031198
Internal ID: BDB031198
Activity data available Local docking-ready structure
Dock with P40337
Structure
/e3_file/ligand_db/generated/BDB031198/BDB031198.sdf
Basic Properties
Compound ID
E3L031198
Internal ID
BDB031198
Molecular formula
C17H25N5O3
Molecular weight
347.419000
Exact mass
347.195740
XLogP
1.8193
TPSA
108.1400
HBA / HBD
6 / 2
Rotatable bonds
6
Heavy atoms / rings
25 / 3
Activity summary
Kd unknown 30000.00000000 nM
1 activity record(s) imported
InChIKey
XIJQEVCNRXENLK-RJTITELWSA-N
SMILES
CCCc1nnc(C(C(=O)N2C[C@H](O)C[C@H]2c2ncc[nH]2)C(C)C)o1
Aliases
BDBM622040 (preferred) US20230312542, Example 162 (source_name) BDBM622040 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P40337 VHL
von Hippel-Lindau disease tumor suppressor		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM622040 medium
; target=von Hippel-Lindau disease tumor suppressor
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM622040 Open - 10.7270/Q25H7MF8
PubChem CID156873349 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CCCc1nnc(C(C(=O)N2C[C@H](O)C[C@H]2c2ncc[nH]2)C(C)C)o1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB031198/BDB031198.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB031198/BDB031198.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB031198/BDB031198.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB031198/BDB031198.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB031198/BDB031198.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
von Hippel-Lindau disease tumor suppressor
P40337
E3 ligase component 		BindingDB:BDBM622040 Kd 30000 nM Low DOI: 10.7270/Q25H7MF8 1