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5-(2-Aminoanilino)-1,3-dihydrobenzimidazol-2-one

E3L031214
Internal ID: BDB031214
Activity data available Local docking-ready structure
Dock with Q16531 Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB031214/BDB031214.sdf
Basic Properties
Compound ID
E3L031214
Internal ID
BDB031214
Molecular formula
C13H12N4O
Molecular weight
240.266000
Exact mass
240.101111
XLogP
2.1820
TPSA
86.7000
HBA / HBD
3 / 4
Rotatable bonds
2
Heavy atoms / rings
18 / 3
Activity summary
Kd unknown 54.00000000 nM
2 activity record(s) imported
InChIKey
BBMULEDTRSZOTQ-UHFFFAOYSA-N
SMILES
Nc1ccccc1Nc1ccc2[nH]c(=O)[nH]c2c1
Aliases
BDBM627000 (preferred) 5-(2-Aminoanilino)-1,3-dihydrobenzimidazol-2-one (source_name) BDBM627000 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q16531 DDB1;XAP1
DNA damage-binding protein 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM627000 medium
; target=DNA damage-binding protein 1
Q96SW2 CRBN;AD-006
Protein cereblon		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM627000 medium
; target=DNA damage-binding protein 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM627000 Open - 10.7270/Q2HD80T6
PubChem CID115124304 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Nc1ccccc1Nc1ccc2[nH]c(=O)[nH]c2c1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB031214/BDB031214.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB031214/BDB031214.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB031214/BDB031214.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB031214/BDB031214.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB031214/BDB031214.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
DNA damage-binding protein 1
Q16531
E3 ligase component 		BindingDB:BDBM627000 Kd 54 nM High DOI: 10.7270/Q2HD80T6 2 source records