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BDBM627095

E3L031305
Internal ID: BDB031305
Activity data available Local docking-ready structure
Dock with Q16531 Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB031305/BDB031305.sdf
Basic Properties
Compound ID
E3L031305
Internal ID
BDB031305
Molecular formula
C16H15N5O3
Molecular weight
325.328000
Exact mass
325.117489
XLogP
2.4586
TPSA
118.8800
HBA / HBD
3 / 5
Rotatable bonds
3
Heavy atoms / rings
24 / 3
Activity summary
Kd unknown 14.00000000 nM
2 activity record(s) imported
InChIKey
DJZKXEMLMCQOBR-UHFFFAOYSA-N
SMILES
CC(=O)Nc1ccc(NC(=O)Nc2ccc3[nH]c(=O)[nH]c3c2)cc1
Aliases
BDBM627095 (preferred) N-[4-[(2-oxo-1,3-dihydrobenzimidazol-5-yl)carbamoylamino]phenyl]acetamide (source_name) BDBM627095 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q16531 DDB1;XAP1
DNA damage-binding protein 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM627095 medium
; target=DNA damage-binding protein 1
Q96SW2 CRBN;AD-006
Protein cereblon		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM627095 medium
; target=DNA damage-binding protein 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM627095 Open - 10.7270/Q2HD80T6
PubChem CID48746599 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CC(=O)Nc1ccc(NC(=O)Nc2ccc3[nH]c(=O)[nH]c3c2)cc1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB031305/BDB031305.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB031305/BDB031305.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB031305/BDB031305.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB031305/BDB031305.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB031305/BDB031305.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
DNA damage-binding protein 1
Q16531
E3 ligase component 		BindingDB:BDBM627095 Kd 14 nM High DOI: 10.7270/Q2HD80T6 2 source records