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BDBM627110

E3L031320
Internal ID: BDB031320
Activity data available Local docking-ready structure
Dock with Q16531 Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB031320/BDB031320.sdf
Basic Properties
Compound ID
E3L031320
Internal ID
BDB031320
Molecular formula
C15H13N3O3S
Molecular weight
315.354000
Exact mass
315.067762
XLogP
1.6076
TPSA
86.0300
HBA / HBD
3 / 2
Rotatable bonds
2
Heavy atoms / rings
22 / 4
Activity summary
Kd unknown 48.00000000 nM
2 activity record(s) imported
InChIKey
HMIHREUESYCKIF-UHFFFAOYSA-N
SMILES
O=c1[nH]c2ccc(S(=O)(=O)N3CCc4ccccc43)cc2[nH]1
Aliases
BDBM627110 (preferred) 5-(2,3-Dihydroindol-1-ylsulfonyl)-1,3-dihydrobenzimidazol-2-one (source_name) BDBM627110 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q16531 DDB1;XAP1
DNA damage-binding protein 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM627110 medium
; target=DNA damage-binding protein 1
Q96SW2 CRBN;AD-006
Protein cereblon		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM627110 medium
; target=DNA damage-binding protein 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM627110 Open - 10.7270/Q2HD80T6
PubChem CID7602544 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=c1[nH]c2ccc(S(=O)(=O)N3CCc4ccccc43)cc2[nH]1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB031320/BDB031320.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB031320/BDB031320.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB031320/BDB031320.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB031320/BDB031320.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB031320/BDB031320.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
DNA damage-binding protein 1
Q16531
E3 ligase component 		BindingDB:BDBM627110 Kd 48 nM High DOI: 10.7270/Q2HD80T6 2 source records