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BDBM627140

E3L031350
Internal ID: BDB031350
Activity data available Local docking-ready structure
Dock with Q16531 Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB031350/BDB031350.sdf
Basic Properties
Compound ID
E3L031350
Internal ID
BDB031350
Molecular formula
C16H16N4O2
Molecular weight
296.330000
Exact mass
296.127326
XLogP
2.4267
TPSA
89.7800
HBA / HBD
3 / 4
Rotatable bonds
4
Heavy atoms / rings
22 / 3
Activity summary
Kd unknown 18.00000000 nM
2 activity record(s) imported
InChIKey
BISKMDVKQLTWID-UHFFFAOYSA-N
SMILES
CC(=O)Nc1ccc(NCc2ccc3[nH]c(=O)[nH]c3c2)cc1
Aliases
BDBM627140 (preferred) N-[4-[(2-oxo-1,3-dihydrobenzimidazol-5-yl)methylamino]phenyl]acetamide (source_name) BDBM627140 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q16531 DDB1;XAP1
DNA damage-binding protein 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM627140 medium
; target=DNA damage-binding protein 1
Q96SW2 CRBN;AD-006
Protein cereblon		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM627140 medium
; target=DNA damage-binding protein 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM627140 Open - 10.7270/Q2HD80T6
PubChem CID137526046 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CC(=O)Nc1ccc(NCc2ccc3[nH]c(=O)[nH]c3c2)cc1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB031350/BDB031350.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB031350/BDB031350.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB031350/BDB031350.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB031350/BDB031350.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB031350/BDB031350.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
DNA damage-binding protein 1
Q16531
E3 ligase component 		BindingDB:BDBM627140 Kd 18 nM High DOI: 10.7270/Q2HD80T6 2 source records