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BDBM628702

E3L031486
Internal ID: BDB031486
Activity data available Local docking-ready structure
Dock with Q00987
Structure
/e3_file/ligand_db/generated/BDB031486/BDB031486.sdf
Basic Properties
Compound ID
E3L031486
Internal ID
BDB031486
Molecular formula
C28H23Cl2N3O4
Molecular weight
536.415000
Exact mass
535.106562
XLogP
4.7811
TPSA
89.6000
HBA / HBD
5 / 1
Rotatable bonds
6
Heavy atoms / rings
37 / 5
Activity summary
IC50 unknown 28.00000000 nM
1 activity record(s) imported
InChIKey
JNUWWHYUCZGJMZ-PLYLYKGUSA-N
SMILES
CO[C@]1(c2ccc(Cl)cc2)c2ccc(C(C)(O)c3ccc[n+]([O-])c3)cc2C(=O)N1Cc1ccc(Cl)cn1
Aliases
BDBM628702 (preferred) (3R)-3-(4-Chlorophenyl)-2-[(5-chloropyridin-2-yl)methyl]-6-[1-hydroxy-1-(1-oxo-1lambda5-pyridin-3-yl)ethyl]-3-methoxy-2,3-dihydro-1H-isoindol-1-one (source_name) BDBM628702 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q00987 MDM2
E3 ubiquitin-protein ligase Mdm2		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM628702 medium
; target=E3 ubiquitin-protein ligase Mdm2
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM628702 Open - 10.7270/Q2FJ2MZX
PubChem CID137497985 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CO[C@]1(c2ccc(Cl)cc2)c2ccc(C(C)(O)c3ccc[n+]([O-])c3)cc2C(=O)N1Cc1ccc(Cl)cn1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB031486/BDB031486.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB031486/BDB031486.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB031486/BDB031486.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB031486/BDB031486.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB031486/BDB031486.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
E3 ubiquitin-protein ligase Mdm2
Q00987
E3 ligase component 		BindingDB:BDBM628702 IC50 28 nM High DOI: 10.7270/Q2FJ2MZX 1