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BDBM631089

E3L031578
Internal ID: BDB031578
Activity data available Local docking-ready structure
Dock with Q16531 Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB031578/BDB031578.sdf
Basic Properties
Compound ID
E3L031578
Internal ID
BDB031578
Molecular formula
C15H15N3O3
Molecular weight
285.303000
Exact mass
285.111341
XLogP
1.0451
TPSA
82.2700
HBA / HBD
3 / 2
Rotatable bonds
2
Heavy atoms / rings
21 / 3
Activity summary
Kd unknown 3.00000000 nM
2 activity record(s) imported
InChIKey
RAJBEYWMJFCBTJ-UHFFFAOYSA-N
SMILES
CN(C(=O)c1c[nH]c2ccccc12)C1CCC(=O)NC1=O
Aliases
BDBM631089 (preferred) N-(2,6-Dioxopiperidin-3-yl)-N-methyl-1H-indole-3-carboxamide (source_name) BDBM631089 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q16531 DDB1;XAP1
DNA damage-binding protein 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM631089 medium
; target=DNA damage-binding protein 1
Q96SW2 CRBN;AD-006
Protein cereblon		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM631089 medium
; target=DNA damage-binding protein 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM631089 Open - 10.7270/Q20869GN
PubChem CID137533610 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CN(C(=O)c1c[nH]c2ccccc12)C1CCC(=O)NC1=O keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB031578/BDB031578.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB031578/BDB031578.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB031578/BDB031578.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB031578/BDB031578.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB031578/BDB031578.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
DNA damage-binding protein 1
Q16531
E3 ligase component 		BindingDB:BDBM631089 Kd 3 nM Very high DOI: 10.7270/Q20869GN 2 source records