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BDBM631122

E3L031611
Internal ID: BDB031611
Activity data available Local docking-ready structure
Dock with Q16531 Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB031611/BDB031611.sdf
Basic Properties
Compound ID
E3L031611
Internal ID
BDB031611
Molecular formula
C13H12N4O3
Molecular weight
272.264000
Exact mass
272.090940
XLogP
0.0979
TPSA
103.9500
HBA / HBD
4 / 3
Rotatable bonds
2
Heavy atoms / rings
20 / 3
Activity summary
Kd < 1.00000000 nM
2 activity record(s) imported
InChIKey
ZUISDMVKTDAPMR-SECBINFHSA-N
SMILES
O=C1CC[C@@H](NC(=O)c2n[nH]c3ccccc23)C(=O)N1
Aliases
BDBM631122 (preferred) (R)-N-(2,6-Dioxopiperidin-3-yl)-1H-indazole-3-carboxamide (source_name) BDBM631122 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q16531 DDB1;XAP1
DNA damage-binding protein 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM631122 medium
; target=DNA damage-binding protein 1
Q96SW2 CRBN;AD-006
Protein cereblon		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM631122 medium
; target=DNA damage-binding protein 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM631122 Open - 10.7270/Q20869GN
PubChem CID130441809 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C1CC[C@@H](NC(=O)c2n[nH]c3ccccc23)C(=O)N1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB031611/BDB031611.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB031611/BDB031611.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB031611/BDB031611.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB031611/BDB031611.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB031611/BDB031611.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
DNA damage-binding protein 1
Q16531
E3 ligase component 		BindingDB:BDBM631122 Kd <1 nM Very high DOI: 10.7270/Q20869GN 2 source records