< Back to small molecule database

US11802131, Example 64

E3L031625
Internal ID: BDB031625
Activity data available Local docking-ready structure
Dock with Q16531 Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB031625/BDB031625.sdf
Basic Properties
Compound ID
E3L031625
Internal ID
BDB031625
Molecular formula
C14H16N4O3
Molecular weight
288.307000
Exact mass
288.122240
XLogP
0.3490
TPSA
91.4000
HBA / HBD
4 / 2
Rotatable bonds
1
Heavy atoms / rings
21 / 3
Activity summary
Kd unknown 641.00000000 nM
2 activity record(s) imported
InChIKey
JNFKCVUMZWHHQP-SNVBAGLBSA-N
SMILES
O=C1CC[C@@H](NC(=O)N2CCCc3cccnc32)C(=O)N1
Aliases
BDBM631137 (preferred) US11802131, Example 64 (source_name) BDBM631137 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q16531 DDB1;XAP1
DNA damage-binding protein 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM631137 medium
; target=DNA damage-binding protein 1
Q96SW2 CRBN;AD-006
Protein cereblon		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM631137 medium
; target=DNA damage-binding protein 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM631137 Open - 10.7270/Q20869GN
PubChem CID154591723 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C1CC[C@@H](NC(=O)N2CCCc3cccnc32)C(=O)N1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB031625/BDB031625.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB031625/BDB031625.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB031625/BDB031625.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB031625/BDB031625.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB031625/BDB031625.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
DNA damage-binding protein 1
Q16531
E3 ligase component 		BindingDB:BDBM631137 Kd 641 nM Moderate DOI: 10.7270/Q20869GN 2 source records