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BDBM651632

E3L032167
Internal ID: BDB032167
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB032167/BDB032167.sdf
Basic Properties
Compound ID
E3L032167
Internal ID
BDB032167
Molecular formula
C27H31N5O6
Molecular weight
521.574000
Exact mass
521.227434
XLogP
2.9787
TPSA
130.1700
HBA / HBD
8 / 2
Rotatable bonds
6
Heavy atoms / rings
38 / 5
Activity summary
IC50 < 600.00000000 nM
1 activity record(s) imported
InChIKey
GOEALBLRCXGNRT-UHFFFAOYSA-N
SMILES
COc1cc(COC(=O)Nc2ccc(N3CCCCC3C)nc2)cc2c1CN(C1CCC(=O)NC1=O)C2=O
Aliases
BDBM651632 (preferred) [2-(2,6-dioxopiperidin-3-yl)-7-methoxy-3-oxo-1H-isoindol-5-yl]methyl N-[6-(2-methylpiperidin-1-yl)-3-pyridinyl]carbamate (source_name) BDBM651632 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM651632 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM651632 Open - 10.7270/Q2MP57G5
PubChem CID166074284 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready COc1cc(COC(=O)Nc2ccc(N3CCCCC3C)nc2)cc2c1CN(C1CCC(=O)NC1=O)C2=O keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB032167/BDB032167.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB032167/BDB032167.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB032167/BDB032167.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB032167/BDB032167.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB032167/BDB032167.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component 		BindingDB:BDBM651632 IC50 <600 nM Uncertain DOI: 10.7270/Q2MP57G5 1