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US20240059691, Example 4441

E3L032495
Internal ID: BDB032495
Activity data available Local docking-ready structure
Dock with P00748
Structure
/e3_file/ligand_db/generated/BDB032495/BDB032495.sdf
Basic Properties
Compound ID
E3L032495
Internal ID
BDB032495
Molecular formula
C29H39N5O2
Molecular weight
489.664000
Exact mass
489.310375
XLogP
4.3741
TPSA
94.7200
HBA / HBD
6 / 3
Rotatable bonds
10
Heavy atoms / rings
36 / 4
Activity summary
IC50 unknown 200.00000000 nM
2 activity record(s) imported
InChIKey
CQDVUJSXYFSSHR-UHFFFAOYSA-N
SMILES
CC(C)N1CCC(CN(CCCO)C(=O)c2cccc(CNc3cccc4c(N)nccc34)c2)CC1
Aliases
BDBM652726 (preferred) US20240059691, Example 4441 (source_name) BDBM652726 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P00748 F12
Coagulation factor XII
reported_binder bindingdb_reported Yes No low BindingDB:BDBM652726 medium
; target=Coagulation factor XII
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM652726 Open - 10.7270/Q2NG4VVD
PubChem CID171362832 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CC(C)N1CCC(CN(CCCO)C(=O)c2cccc(CNc3cccc4c(N)nccc34)c2)CC1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB032495/BDB032495.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB032495/BDB032495.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB032495/BDB032495.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB032495/BDB032495.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB032495/BDB032495.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Coagulation factor XII
P00748
E3 ligase component
BindingDB:BDBM652726 IC50 6500 nM Low DOI: 10.7270/Q2NG4VVD 1
Coagulation factor XII
P00748
E3 ligase component
BindingDB:BDBM652726 IC50 200 nM Moderate DOI: 10.7270/Q2NG4VVD 1