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BDBM653556

E3L032541
Internal ID: BDB032541
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB032541/BDB032541.sdf
Basic Properties
Compound ID
E3L032541
Internal ID
BDB032541
Molecular formula
C17H17N3O5
Molecular weight
343.339000
Exact mass
343.116821
XLogP
-0.4392
TPSA
96.9700
HBA / HBD
6 / 2
Rotatable bonds
1
Heavy atoms / rings
25 / 5
Activity summary
IC50 unknown 259.00000000 nM
1 activity record(s) imported
InChIKey
CQWGOLYDVRZUFL-UHFFFAOYSA-N
SMILES
O=C1CCC(N2Cc3c(ccc4c3OCC3(CNC3)O4)C2=O)C(=O)N1
Aliases
BDBM653556 (preferred) 3-(7'-oxo-7',9'-dihydro-2'H,8'H-spiro[azetidine-3,3'-[1,4]dioxino[2,3-e]isoindol]-8'-yl)piperidine-2,6-dione (source_name) BDBM653556 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM653556 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM653556 Open - 10.7270/Q24J0K9F
PubChem CID170729136 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C1CCC(N2Cc3c(ccc4c3OCC3(CNC3)O4)C2=O)C(=O)N1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB032541/BDB032541.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB032541/BDB032541.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB032541/BDB032541.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB032541/BDB032541.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB032541/BDB032541.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component 		BindingDB:BDBM653556 IC50 259 nM Moderate DOI: 10.7270/Q24J0K9F 1