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BDBM653937

E3L032716
Internal ID: BDB032716
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB032716/BDB032716.sdf
Basic Properties
Compound ID
E3L032716
Internal ID
BDB032716
Molecular formula
C25H27N5O5
Molecular weight
477.521000
Exact mass
477.201219
XLogP
1.7378
TPSA
120.9400
HBA / HBD
7 / 2
Rotatable bonds
5
Heavy atoms / rings
35 / 5
Activity summary
IC50 < 500.00000000 nM
1 activity record(s) imported
InChIKey
CCEAPCUJRPZOFY-UHFFFAOYSA-N
SMILES
O=C1CCC(N2Cc3ccc(COC(=O)NC4CCN(c5ccccn5)CC4)cc3C2=O)C(=O)N1
Aliases
BDBM653937 (preferred) [2-(2,6-dioxopiperidin-3-yl)-3-oxo-1H-isoindol-5-yl]methyl N-(1-pyridin-2-ylpiperidin-4-yl)carbamate (source_name) BDBM653937 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM653937 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM653937 Open - 10.7270/Q2ZW1R6F
PubChem CID164584393 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C1CCC(N2Cc3ccc(COC(=O)NC4CCN(c5ccccn5)CC4)cc3C2=O)C(=O)N1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB032716/BDB032716.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB032716/BDB032716.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB032716/BDB032716.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB032716/BDB032716.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB032716/BDB032716.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component 		BindingDB:BDBM653937 IC50 <500 nM Uncertain DOI: 10.7270/Q2ZW1R6F 1