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BDBM653939

E3L032718
Internal ID: BDB032718
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB032718/BDB032718.sdf
Basic Properties
Compound ID
E3L032718
Internal ID
BDB032718
Molecular formula
C23H23N3O6
Molecular weight
437.452000
Exact mass
437.158685
XLogP
2.5133
TPSA
114.0400
HBA / HBD
6 / 2
Rotatable bonds
5
Heavy atoms / rings
32 / 4
Activity summary
IC50 > 1700.00000000 nM
1 activity record(s) imported
InChIKey
PNPIXDDTLXQYPN-UHFFFAOYSA-N
SMILES
COc1cc(NC(=O)OCc2ccc3c(c2)C(=O)N(C2CCC(=O)NC2=O)C3)ccc1C
Aliases
BDBM653939 (preferred) [2-(2,6-dioxopiperidin-3-yl)-3-oxo-1H-isoindol-5-yl]methyl N-(3-methoxy-4-methylphenyl)carbamate (source_name) BDBM653939 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM653939 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM653939 Open - 10.7270/Q2ZW1R6F
PubChem CID164584069 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready COc1cc(NC(=O)OCc2ccc3c(c2)C(=O)N(C2CCC(=O)NC2=O)C3)ccc1C keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB032718/BDB032718.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB032718/BDB032718.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB032718/BDB032718.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB032718/BDB032718.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB032718/BDB032718.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component 		BindingDB:BDBM653939 IC50 >1700 nM Low DOI: 10.7270/Q2ZW1R6F 1