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BDBM653967

E3L032746
Internal ID: BDB032746
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB032746/BDB032746.sdf
Basic Properties
Compound ID
E3L032746
Internal ID
BDB032746
Molecular formula
C26H27N5O6
Molecular weight
505.531000
Exact mass
505.196134
XLogP
1.9589
TPSA
130.1700
HBA / HBD
8 / 2
Rotatable bonds
5
Heavy atoms / rings
37 / 6
Activity summary
IC50 < 500.00000000 nM
1 activity record(s) imported
InChIKey
XPLVVLFEUHPDDV-UHFFFAOYSA-N
SMILES
O=C1CCC(N2Cc3ccc(COC(=O)Nc4ccc(N5CC6CCC(C5)O6)nc4)cc3C2=O)C(=O)N1
Aliases
BDBM653967 (preferred) [2-(2,6-dioxopiperidin-3-yl)-3-oxo-1H-isoindol-5-yl]methyl N-[6-(8-oxa-3-azabicyclo[3.2.1]octan-3-yl)-3-pyridinyl]carbamate (source_name) BDBM653967 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM653967 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM653967 Open - 10.7270/Q2ZW1R6F
PubChem CID164584146 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C1CCC(N2Cc3ccc(COC(=O)Nc4ccc(N5CC6CCC(C5)O6)nc4)cc3C2=O)C(=O)N1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB032746/BDB032746.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB032746/BDB032746.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB032746/BDB032746.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB032746/BDB032746.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB032746/BDB032746.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component 		BindingDB:BDBM653967 IC50 <500 nM Uncertain DOI: 10.7270/Q2ZW1R6F 1