< Back to small molecule database

BDBM654032

E3L032811
Internal ID: BDB032811
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB032811/BDB032811.sdf
Basic Properties
Compound ID
E3L032811
Internal ID
BDB032811
Molecular formula
C24H26N4O5
Molecular weight
450.495000
Exact mass
450.190320
XLogP
2.8888
TPSA
117.7000
HBA / HBD
6 / 2
Rotatable bonds
4
Heavy atoms / rings
33 / 4
Activity summary
IC50 unknown 800.00000000 nM
1 activity record(s) imported
InChIKey
ATKZJCRLCYLLEQ-UHFFFAOYSA-N
SMILES
CC(C)(C)c1ccc(NC(=O)OCc2ccc3c(c2)C(=O)N(C2CCC(=O)NC2=O)C3)nc1
Aliases
BDBM654032 (preferred) [2-(2,6-dioxopiperidin-3-yl)-3-oxo-1H-isoindol-5-yl]methyl N-(5-tert-butyl-2-pyridinyl)carbamate (source_name) BDBM654032 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM654032 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM654032 Open - 10.7270/Q2ZW1R6F
PubChem CID169322859 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CC(C)(C)c1ccc(NC(=O)OCc2ccc3c(c2)C(=O)N(C2CCC(=O)NC2=O)C3)nc1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB032811/BDB032811.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB032811/BDB032811.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB032811/BDB032811.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB032811/BDB032811.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB032811/BDB032811.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component 		BindingDB:BDBM654032 IC50 800 nM Moderate DOI: 10.7270/Q2ZW1R6F 1