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BDBM655779

E3L033008
Internal ID: BDB033008
Activity data available Local docking-ready structure
Dock with Q16531
Structure
/e3_file/ligand_db/generated/BDB033008/BDB033008.sdf
Basic Properties
Compound ID
E3L033008
Internal ID
BDB033008
Molecular formula
C21H30N6O7S
Molecular weight
510.573000
Exact mass
510.189668
XLogP
1.9908
TPSA
179.9700
HBA / HBD
11 / 4
Rotatable bonds
16
Heavy atoms / rings
35 / 2
Activity summary
Kd unknown 60000.00000000 nM
1 activity record(s) imported
InChIKey
IQEMBIUCBLNXAX-UHFFFAOYSA-N
SMILES
CC(=O)Nc1cc(NCCOCCOCCOCCN)ccc1C(=O)Nc1nc(C)c([N+](=O)[O-])s1
Aliases
BDBM655779 (preferred) 2-acetamido-4-((2-(2-(2-(2-aminoethoxy)ethoxy) ethoxy)ethyl)amino)-N-(4-methyl-5-nitrothiazol-2-yl)benzamide (source_name) BDBM655779 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q16531 DDB1;XAP1
DNA damage-binding protein 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM655779 medium
; target=DNA damage-binding protein 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM655779 Open - 10.7270/Q22N56JB
PubChem CID167361781 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CC(=O)Nc1cc(NCCOCCOCCOCCN)ccc1C(=O)Nc1nc(C)c([N+](=O)[O-])s1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB033008/BDB033008.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB033008/BDB033008.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB033008/BDB033008.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB033008/BDB033008.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB033008/BDB033008.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
DNA damage-binding protein 1
Q16531
E3 ligase component 		BindingDB:BDBM655779 Kd 60000 nM Low DOI: 10.7270/Q22N56JB 1