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US12172992, Example 11

E3L033534
Internal ID: BDB033534
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB033534/BDB033534.sdf
Basic Properties
Compound ID
E3L033534
Internal ID
BDB033534
Molecular formula
C41H46FN11O4
Molecular weight
775.890000
Exact mass
775.371827
XLogP
5.7122
TPSA
174.6100
HBA / HBD
12 / 3
Rotatable bonds
11
Heavy atoms / rings
57 / 7
Activity summary
IC50 unknown 2150.00000000 nM
2 activity record(s) imported
InChIKey
DXAMCKURBGAPRL-AREMUKBSSA-N
SMILES
Cc1c([C@@H](C)NC(=O)c2nc(C(C)(C)C)no2)ccc(-c2cc(Nc3ccc(N4CCN(CCc5ccc(N6CCC(=O)NC6=O)cc5)CC4)cn3)ncn2)c1F
Aliases
BDBM662957 (preferred) US12172992, Example 11 (source_name) BDBM662957 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM662957 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM662957 Open - 10.7270/Q22N573X; 10.7270/Q27W6HGH
PubChem CID169081291 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cc1c([C@@H](C)NC(=O)c2nc(C(C)(C)C)no2)ccc(-c2cc(Nc3ccc(N4CCN(CCc5ccc(N6CCC(=O)NC6=O)cc5)CC4)cn3)ncn2)c1F keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB033534/BDB033534.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB033534/BDB033534.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB033534/BDB033534.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB033534/BDB033534.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB033534/BDB033534.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component 		BindingDB:BDBM662957 IC50 2150 nM Low DOI: 10.7270/Q27W6HGH 1
Protein cereblon
Q96SW2
E3 ligase component 		BindingDB:BDBM662957 IC50 2150 nM Low DOI: 10.7270/Q22N573X 1