< Back to small molecule database

US20240166635, Example 36a

E3L033707
Internal ID: BDB033707
Activity data available Local docking-ready structure
Dock with P51948
Structure
/e3_file/ligand_db/generated/BDB033707/BDB033707.sdf
Basic Properties
Compound ID
E3L033707
Internal ID
BDB033707
Molecular formula
C18H27N5O4S
Molecular weight
409.512000
Exact mass
409.178375
XLogP
1.2566
TPSA
128.4400
HBA / HBD
8 / 2
Rotatable bonds
6
Heavy atoms / rings
28 / 3
Activity summary
IC50 unknown 550.00000000 nM
1 activity record(s) imported
InChIKey
YOHCMXQAXUTESC-UHFFFAOYSA-N
SMILES
CCS(=O)(=O)N1CCC(Nc2ncc(C#N)c(OC3CCCC3(C)O)n2)CC1
Aliases
BDBM676297 (preferred) US20240166635, Example 36a (source_name) BDBM676297 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P51948 MNAT1;CAP35;MAT1;RNF66
CDK-activating kinase assembly factor MAT1
reported_binder bindingdb_reported Yes No low BindingDB:BDBM676297 medium
; target=Cyclin-H
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM676297 Open - 10.7270/Q2GM8CMT
PubChem CID167090011 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CCS(=O)(=O)N1CCC(Nc2ncc(C#N)c(OC3CCCC3(C)O)n2)CC1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB033707/BDB033707.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB033707/BDB033707.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB033707/BDB033707.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB033707/BDB033707.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB033707/BDB033707.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Cyclin-H
P51948
E3 ligase component
BindingDB:BDBM676297 IC50 550 nM Moderate DOI: 10.7270/Q2GM8CMT 1