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US20240166635, Example 43a

E3L033714
Internal ID: BDB033714
Activity data available Local docking-ready structure
Dock with P51948
Structure
/e3_file/ligand_db/generated/BDB033714/BDB033714.sdf
Basic Properties
Compound ID
E3L033714
Internal ID
BDB033714
Molecular formula
C18H24F3N5O4S
Molecular weight
463.482000
Exact mass
463.150110
XLogP
1.7990
TPSA
128.4400
HBA / HBD
8 / 2
Rotatable bonds
6
Heavy atoms / rings
31 / 3
Activity summary
IC50 unknown 550.00000000 nM
2 activity record(s) imported
InChIKey
TXBBMRZBMVLLAQ-UHFFFAOYSA-N
SMILES
CC1(O)CCCC1Oc1nc(NC2CCN(S(=O)(=O)CC(F)(F)F)CC2)ncc1C#N
Aliases
BDBM676311 (preferred) US20240166635, Example 43a (source_name) BDBM676311 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P51948 MNAT1;CAP35;MAT1;RNF66
CDK-activating kinase assembly factor MAT1
reported_binder bindingdb_reported Yes No low BindingDB:BDBM676311 medium
; target=Cyclin-H
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM676311 Open - 10.7270/Q2GM8CMT
PubChem CID167090053 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CC1(O)CCCC1Oc1nc(NC2CCN(S(=O)(=O)CC(F)(F)F)CC2)ncc1C#N keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB033714/BDB033714.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB033714/BDB033714.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB033714/BDB033714.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB033714/BDB033714.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB033714/BDB033714.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Cyclin-H
P51948
E3 ligase component
BindingDB:BDBM676311 IC50 >1000 nM Moderate DOI: 10.7270/Q2GM8CMT 1
Cyclin-H
P51948
E3 ligase component
BindingDB:BDBM676311 IC50 550 nM Moderate DOI: 10.7270/Q2GM8CMT 1