< Back to small molecule database

US20240166635, Example 62

E3L033733
Internal ID: BDB033733
Activity data available Local docking-ready structure
Dock with P51948
Structure
/e3_file/ligand_db/generated/BDB033733/BDB033733.sdf
Basic Properties
Compound ID
E3L033733
Internal ID
BDB033733
Molecular formula
C21H29N7O3S
Molecular weight
459.576000
Exact mass
459.205259
XLogP
2.3061
TPSA
126.0300
HBA / HBD
8 / 1
Rotatable bonds
7
Heavy atoms / rings
32 / 4
Activity summary
IC50 unknown 550.00000000 nM
1 activity record(s) imported
InChIKey
MXLQXNPUTMMXQE-UHFFFAOYSA-N
SMILES
Cn1cc(S(=O)(=O)N2CCC(Nc3ncc(C#N)c(OCC4(C)CCCC4)n3)CC2)cn1
Aliases
BDBM676341 (preferred) US20240166635, Example 62 (source_name) BDBM676341 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P51948 MNAT1;CAP35;MAT1;RNF66
CDK-activating kinase assembly factor MAT1
reported_binder bindingdb_reported Yes No low BindingDB:BDBM676341 medium
; target=Cyclin-H
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM676341 Open - 10.7270/Q2GM8CMT
PubChem CID167089922 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cn1cc(S(=O)(=O)N2CCC(Nc3ncc(C#N)c(OCC4(C)CCCC4)n3)CC2)cn1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB033733/BDB033733.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB033733/BDB033733.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB033733/BDB033733.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB033733/BDB033733.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB033733/BDB033733.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Cyclin-H
P51948
E3 ligase component
BindingDB:BDBM676341 IC50 550 nM Moderate DOI: 10.7270/Q2GM8CMT 1