< Back to small molecule database

US20240166635, Example 125a

E3L033786
Internal ID: BDB033786
Activity data available Local docking-ready structure
Dock with P51948
Structure
/e3_file/ligand_db/generated/BDB033786/BDB033786.sdf
Basic Properties
Compound ID
E3L033786
Internal ID
BDB033786
Molecular formula
C20H27F3N6O5S
Molecular weight
520.534000
Exact mass
520.171574
XLogP
1.4128
TPSA
131.7000
HBA / HBD
9 / 2
Rotatable bonds
6
Heavy atoms / rings
35 / 4
Activity summary
IC50 < 10.00000000 nM
2 activity record(s) imported
InChIKey
KXDROPRNEYFQHH-UHFFFAOYSA-N
SMILES
Cn1cc(S(=O)(=O)N2CCC(Nc3ncc(C(F)(F)F)c(OC4CCOCC4(C)O)n3)CC2)cn1
Aliases
BDBM676432 (preferred) US20240166635, Example 125a (source_name) BDBM676432 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P51948 MNAT1;CAP35;MAT1;RNF66
CDK-activating kinase assembly factor MAT1
reported_binder bindingdb_reported Yes No low BindingDB:BDBM676432 medium
; target=Cyclin-H
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM676432 Open - 10.7270/Q2GM8CMT
PubChem CID167090017 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cn1cc(S(=O)(=O)N2CCC(Nc3ncc(C(F)(F)F)c(OC4CCOCC4(C)O)n3)CC2)cn1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB033786/BDB033786.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB033786/BDB033786.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB033786/BDB033786.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB033786/BDB033786.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB033786/BDB033786.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Cyclin-H
P51948
E3 ligase component
BindingDB:BDBM676432 IC50 <10 nM Very high DOI: 10.7270/Q2GM8CMT 1
Cyclin-H
P51948
E3 ligase component
BindingDB:BDBM676432 IC50 550 nM Moderate DOI: 10.7270/Q2GM8CMT 1