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US12012467, Example 139

E3L033855
Internal ID: BDB033855
Activity data available Local docking-ready structure
Dock with Q96GG9
Structure
/e3_file/ligand_db/generated/BDB033855/BDB033855.sdf
Basic Properties
Compound ID
E3L033855
Internal ID
BDB033855
Molecular formula
C41H47F2N5O4
Molecular weight
711.854000
Exact mass
711.359611
XLogP
5.1825
TPSA
119.6400
HBA / HBD
5 / 4
Rotatable bonds
15
Heavy atoms / rings
52 / 5
Activity summary
IC50 > 10000.00000000 nM
1 activity record(s) imported
InChIKey
PEMYHNFAYZFYJY-XFKJAIHHSA-N
SMILES
CCC(=O)N[C@@H](Cc1ccc2ccccc2c1)C(=O)N[C@H](C(=O)N[C@@H](CN(C)C)C(=O)NC(c1ccc(F)cc1)c1ccc(F)cc1)C1CCCC1
Aliases
BDBM680905 (preferred) US12012467, Example 139 (source_name) BDBM680905 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96GG9 DCUN1D1;DCN1;DCUN1L1;RP42;SCCRO
DCN1-like protein 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM680905 medium
; target=DCN1-like protein 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM680905 Open - 10.7270/Q2SQ94P1
PubChem CID163863383 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CCC(=O)N[C@@H](Cc1ccc2ccccc2c1)C(=O)N[C@H](C(=O)N[C@@H](CN(C)C)C(=O)NC(c1ccc(F)cc1)c1ccc(F)cc1)C1CCCC1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB033855/BDB033855.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB033855/BDB033855.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB033855/BDB033855.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB033855/BDB033855.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB033855/BDB033855.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
DCN1-like protein 1
Q96GG9
E3 ligase component 		BindingDB:BDBM680905 IC50 >10000 nM Low DOI: 10.7270/Q2SQ94P1 1