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US12012467, Example 149

E3L033863
Internal ID: BDB033863
Activity data available Local docking-ready structure
Dock with Q96GG9
Structure
/e3_file/ligand_db/generated/BDB033863/BDB033863.sdf
Basic Properties
Compound ID
E3L033863
Internal ID
BDB033863
Molecular formula
C38H49N5O5
Molecular weight
655.840000
Exact mass
655.373370
XLogP
4.2059
TPSA
151.6500
HBA / HBD
6 / 5
Rotatable bonds
15
Heavy atoms / rings
48 / 5
Activity summary
IC50 unknown 378.00000000 nM
1 activity record(s) imported
InChIKey
ZVBDRPAVIOZLKX-MZZRCDJFSA-N
SMILES
CCC(=O)N[C@@H](Cc1ccc2ccccc2c1)C(=O)N[C@H](C(=O)N[C@@H](CCCCN)C(=O)N[C@@H]1CCOc2ccccc21)C1CCCC1
Aliases
BDBM680915 (preferred) US12012467, Example 149 (source_name) BDBM680915 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96GG9 DCUN1D1;DCN1;DCUN1L1;RP42;SCCRO
DCN1-like protein 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM680915 medium
; target=DCN1-like protein 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM680915 Open - 10.7270/Q2SQ94P1
PubChem CID164170665 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CCC(=O)N[C@@H](Cc1ccc2ccccc2c1)C(=O)N[C@H](C(=O)N[C@@H](CCCCN)C(=O)N[C@@H]1CCOc2ccccc21)C1CCCC1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB033863/BDB033863.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB033863/BDB033863.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB033863/BDB033863.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB033863/BDB033863.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB033863/BDB033863.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
DCN1-like protein 1
Q96GG9
E3 ligase component 		BindingDB:BDBM680915 IC50 378 nM Moderate DOI: 10.7270/Q2SQ94P1 1