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US12012467, Example 268

E3L034025
Internal ID: BDB034025
Activity data available Local docking-ready structure
Dock with Q96GG9
Structure
/e3_file/ligand_db/generated/BDB034025/BDB034025.sdf
Basic Properties
Compound ID
E3L034025
Internal ID
BDB034025
Molecular formula
C28H38N6O3S
Molecular weight
538.718000
Exact mass
538.272610
XLogP
4.0752
TPSA
128.8700
HBA / HBD
6 / 4
Rotatable bonds
11
Heavy atoms / rings
38 / 4
Activity summary
IC50 unknown 1208.00000000 nM
1 activity record(s) imported
InChIKey
XLMUKVKZVUPBJS-FCHUYYIVSA-N
SMILES
CCC(=O)N[C@@H](Cc1nc2ccc(C(C)C)cc2s1)C(=O)N[C@H](CNC(=O)c1ncc[nH]1)C1CCCCC1
Aliases
BDBM681093 (preferred) US12012467, Example 268 (source_name) BDBM681093 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96GG9 DCUN1D1;DCN1;DCUN1L1;RP42;SCCRO
DCN1-like protein 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM681093 medium
; target=DCN1-like protein 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM681093 Open - 10.7270/Q2SQ94P1
PubChem CID142442386 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CCC(=O)N[C@@H](Cc1nc2ccc(C(C)C)cc2s1)C(=O)N[C@H](CNC(=O)c1ncc[nH]1)C1CCCCC1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB034025/BDB034025.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB034025/BDB034025.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB034025/BDB034025.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB034025/BDB034025.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB034025/BDB034025.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
DCN1-like protein 1
Q96GG9
E3 ligase component 		BindingDB:BDBM681093 IC50 1208 nM Low DOI: 10.7270/Q2SQ94P1 1