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US12012467, Example 127

E3L034038
Internal ID: BDB034038
Activity data available Local docking-ready structure
Dock with Q96GG9
Structure
/e3_file/ligand_db/generated/BDB034038/BDB034038.sdf
Basic Properties
Compound ID
E3L034038
Internal ID
BDB034038
Molecular formula
C59H72N6O12S
Molecular weight
1089.322000
Exact mass
1088.492893
XLogP
7.2093
TPSA
236.2100
HBA / HBD
15 / 6
Rotatable bonds
24
Heavy atoms / rings
78 / 9
Activity summary
IC50 unknown 22.00000000 nM
1 activity record(s) imported
InChIKey
AELQZSJDIGSZSU-NXWRKTHKSA-N
SMILES
CCC(=O)N[C@@H](Cc1nc2ccc(C(C)C)cc2s1)C(=O)N[C@H](CNC(=O)C1CCN(CCOCCOCCOCCNC(=O)c2ccc3c(c2)C(=O)OC32c3ccc(O)cc3Oc3cc(O)ccc32)CC1)C1CCCCC1
Aliases
BDBM681106 (preferred) US12012467, Example 127 (source_name) BDBM681106 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96GG9 DCUN1D1;DCN1;DCUN1L1;RP42;SCCRO
DCN1-like protein 1
reported_binder bindingdb_reported Yes No low BindingDB:BDBM681106 medium
; target=DCN1-like protein 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM681106 Open - 10.7270/Q2SQ94P1
PubChem CID146928100 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CCC(=O)N[C@@H](Cc1nc2ccc(C(C)C)cc2s1)C(=O)N[C@H](CNC(=O)C1CCN(CCOCCOCCOCCNC(=O)c2ccc3c(c2)C(=O)OC32c3ccc(O)cc3Oc3cc(O)ccc32)CC1)C1CCCCC1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB034038/BDB034038.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB034038/BDB034038.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB034038/BDB034038.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB034038/BDB034038.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB034038/BDB034038.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
DCN1-like protein 1
Q96GG9
E3 ligase component
BindingDB:BDBM681106 IC50 22 nM High DOI: 10.7270/Q2SQ94P1 1