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US12012467, Example 125

E3L034087
Internal ID: BDB034087
Activity data available Local docking-ready structure
Dock with Q96GG9
Structure
/e3_file/ligand_db/generated/BDB034087/BDB034087.sdf
Basic Properties
Compound ID
E3L034087
Internal ID
BDB034087
Molecular formula
C35H53N5O4S
Molecular weight
639.907000
Exact mass
639.381826
XLogP
4.9293
TPSA
112.6600
HBA / HBD
7 / 3
Rotatable bonds
12
Heavy atoms / rings
45 / 5
Activity summary
IC50 unknown 32.00000000 nM
1 activity record(s) imported
InChIKey
DFKYQPOWOISVFD-XZWHSSHBSA-N
SMILES
CCC(=O)N[C@@H](Cc1nc2ccc(C(C)C)cc2s1)C(=O)N[C@H](CNC(=O)C1CCN(C2CCOCC2)CC1)C1CCCCC1
Aliases
BDBM681156 (preferred) US12012467, Example 125 (source_name) BDBM681156 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96GG9 DCUN1D1;DCN1;DCUN1L1;RP42;SCCRO
DCN1-like protein 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM681156 medium
; target=DCN1-like protein 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM681156 Open - 10.7270/Q2SQ94P1
PubChem CID171991138 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CCC(=O)N[C@@H](Cc1nc2ccc(C(C)C)cc2s1)C(=O)N[C@H](CNC(=O)C1CCN(C2CCOCC2)CC1)C1CCCCC1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB034087/BDB034087.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB034087/BDB034087.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB034087/BDB034087.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB034087/BDB034087.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB034087/BDB034087.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
DCN1-like protein 1
Q96GG9
E3 ligase component 		BindingDB:BDBM681156 IC50 32 nM High DOI: 10.7270/Q2SQ94P1 1