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US20240246935, Example 41

E3L034186
Internal ID: BDB034186
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB034186/BDB034186.sdf
Basic Properties
Compound ID
E3L034186
Internal ID
BDB034186
Molecular formula
C28H30ClN3O4
Molecular weight
508.018000
Exact mass
507.192484
XLogP
3.8904
TPSA
78.9500
HBA / HBD
5 / 1
Rotatable bonds
5
Heavy atoms / rings
36 / 6
Activity summary
EC50 unknown 43.00000000 nM
2 activity record(s) imported
InChIKey
SAIAQJVYFFZYQU-LIMDNCRJSA-N
SMILES
O=C1CCC(N2Cc3c(ccc(O[C@H]4CCCC[C@@H]4N4CC(c5ccccc5)C4)c3Cl)C2=O)C(=O)N1
Aliases
BDBM686462 (preferred) US20240246935, Example 41 (source_name) BDBM686462 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon
reported_binder bindingdb_reported Yes No low BindingDB:BDBM686462 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM686462 Open - 10.7270/Q2V410J9
PubChem CID166468899 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C1CCC(N2Cc3c(ccc(O[C@H]4CCCC[C@@H]4N4CC(c5ccccc5)C4)c3Cl)C2=O)C(=O)N1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB034186/BDB034186.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB034186/BDB034186.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB034186/BDB034186.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB034186/BDB034186.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB034186/BDB034186.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component
BindingDB:BDBM686462 EC50 61 nM High DOI: 10.7270/Q2V410J9 1
Protein cereblon
Q96SW2
E3 ligase component
BindingDB:BDBM686462 EC50 43 nM High DOI: 10.7270/Q2V410J9 1