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US20240246935, Example 64

E3L034203
Internal ID: BDB034203
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB034203/BDB034203.sdf
Basic Properties
Compound ID
E3L034203
Internal ID
BDB034203
Molecular formula
C28H29F2N3O4
Molecular weight
509.553000
Exact mass
509.212613
XLogP
3.5152
TPSA
78.9500
HBA / HBD
5 / 1
Rotatable bonds
5
Heavy atoms / rings
37 / 6
Activity summary
EC50 unknown 11.00000000 nM
1 activity record(s) imported
InChIKey
SOUPBOVQNGQLQM-OTKIHZFJSA-N
SMILES
O=C1CCC(N2Cc3cc(O[C@H]4CCCC[C@@H]4N4CC(c5cccc(F)c5F)C4)ccc3C2=O)C(=O)N1
Aliases
BDBM686485 (preferred) US20240246935, Example 64 (source_name) BDBM686485 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon
reported_binder bindingdb_reported Yes No low BindingDB:BDBM686485 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM686485 Open - 10.7270/Q2V410J9
PubChem CID166469091 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C1CCC(N2Cc3cc(O[C@H]4CCCC[C@@H]4N4CC(c5cccc(F)c5F)C4)ccc3C2=O)C(=O)N1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB034203/BDB034203.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB034203/BDB034203.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB034203/BDB034203.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB034203/BDB034203.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB034203/BDB034203.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component
BindingDB:BDBM686485 EC50 11 nM High DOI: 10.7270/Q2V410J9 1