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US20240246935, Example 81

E3L034218
Internal ID: BDB034218
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB034218/BDB034218.sdf
Basic Properties
Compound ID
E3L034218
Internal ID
BDB034218
Molecular formula
C29H30F3N3O5
Molecular weight
557.569000
Exact mass
557.213756
XLogP
3.9775
TPSA
88.1800
HBA / HBD
6 / 1
Rotatable bonds
7
Heavy atoms / rings
40 / 6
Activity summary
EC50 unknown 9.00000000 nM
1 activity record(s) imported
InChIKey
WRKMEHIMOXPCSL-LIMDNCRJSA-N
SMILES
O=C1CCC(N2Cc3c(ccc(O[C@H]4CCCC[C@@H]4N4CC(c5ccc(OC(F)F)cc5)C4)c3F)C2=O)C(=O)N1
Aliases
BDBM686502 (preferred) US20240246935, Example 81 (source_name) BDBM686502 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon
reported_binder bindingdb_reported Yes No low BindingDB:BDBM686502 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM686502 Open - 10.7270/Q2V410J9
PubChem CID169030286 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C1CCC(N2Cc3c(ccc(O[C@H]4CCCC[C@@H]4N4CC(c5ccc(OC(F)F)cc5)C4)c3F)C2=O)C(=O)N1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB034218/BDB034218.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB034218/BDB034218.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB034218/BDB034218.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB034218/BDB034218.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB034218/BDB034218.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component
BindingDB:BDBM686502 EC50 9 nM Very high DOI: 10.7270/Q2V410J9 1