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US20240246935, Example 84

E3L034221
Internal ID: BDB034221
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB034221/BDB034221.sdf
Basic Properties
Compound ID
E3L034221
Internal ID
BDB034221
Molecular formula
C28H27ClN4O4
Molecular weight
519.001000
Exact mass
518.172083
XLogP
3.3720
TPSA
102.7400
HBA / HBD
6 / 1
Rotatable bonds
5
Heavy atoms / rings
37 / 6
Activity summary
EC50 unknown 14.00000000 nM
1 activity record(s) imported
InChIKey
OXAOBLMMSKVSTA-QNRWSGHRSA-N
SMILES
N#Cc1cc(Cl)ccc1C1CN([C@H]2CCC[C@H]2Oc2ccc3c(c2)CN(C2CCC(=O)NC2=O)C3=O)C1
Aliases
BDBM686505 (preferred) US20240246935, Example 84 (source_name) BDBM686505 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon
reported_binder bindingdb_reported Yes No low BindingDB:BDBM686505 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM686505 Open - 10.7270/Q2V410J9
PubChem CID169030281 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready N#Cc1cc(Cl)ccc1C1CN([C@H]2CCC[C@H]2Oc2ccc3c(c2)CN(C2CCC(=O)NC2=O)C3=O)C1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB034221/BDB034221.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB034221/BDB034221.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB034221/BDB034221.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB034221/BDB034221.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB034221/BDB034221.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component
BindingDB:BDBM686505 EC50 14 nM High DOI: 10.7270/Q2V410J9 1