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US20240246935, Example 86

E3L034223
Internal ID: BDB034223
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB034223/BDB034223.sdf
Basic Properties
Compound ID
E3L034223
Internal ID
BDB034223
Molecular formula
C28H27ClFN3O4
Molecular weight
523.992000
Exact mass
523.167412
XLogP
3.6394
TPSA
78.9500
HBA / HBD
5 / 1
Rotatable bonds
5
Heavy atoms / rings
37 / 8
Activity summary
EC50 > 10000.00000000 nM
1 activity record(s) imported
InChIKey
HPNNYDLLFGBDLQ-QAMMTEFWSA-N
SMILES
O=C1NC(=O)C2(N3Cc4cc(O[C@H]5CCC[C@@H]5N5CC(c6ccc(F)cc6Cl)C5)ccc4C3=O)CC1C2
Aliases
BDBM686507 (preferred) US20240246935, Example 86 (source_name) BDBM686507 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon
reported_binder bindingdb_reported Yes No low BindingDB:BDBM686507 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM686507 Open - 10.7270/Q2V410J9
PubChem CID166469208 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C1NC(=O)C2(N3Cc4cc(O[C@H]5CCC[C@@H]5N5CC(c6ccc(F)cc6Cl)C5)ccc4C3=O)CC1C2 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB034223/BDB034223.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB034223/BDB034223.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB034223/BDB034223.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB034223/BDB034223.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB034223/BDB034223.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component
BindingDB:BDBM686507 EC50 >10000 nM Low DOI: 10.7270/Q2V410J9 1