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US20240246935, Example 106

E3L034239
Internal ID: BDB034239
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB034239/BDB034239.sdf
Basic Properties
Compound ID
E3L034239
Internal ID
BDB034239
Molecular formula
C30H33N3O4
Molecular weight
499.611000
Exact mass
499.247107
XLogP
3.6271
TPSA
78.9500
HBA / HBD
5 / 1
Rotatable bonds
5
Heavy atoms / rings
37 / 8
Activity summary
EC50 > 10000.00000000 nM
1 activity record(s) imported
InChIKey
FBAFSJDBUPKOQD-IBBJLJOPSA-N
SMILES
O=C1NC(=O)C2(N3Cc4cc(O[C@H]5CCCC[C@@H]5N5CCC(c6ccccc6)C5)ccc4C3=O)CC1C2
Aliases
BDBM686527 (preferred) US20240246935, Example 106 (source_name) BDBM686527 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon
reported_binder bindingdb_reported Yes No low BindingDB:BDBM686527 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM686527 Open - 10.7270/Q2V410J9
PubChem CID166468797 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C1NC(=O)C2(N3Cc4cc(O[C@H]5CCCC[C@@H]5N5CCC(c6ccccc6)C5)ccc4C3=O)CC1C2 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB034239/BDB034239.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB034239/BDB034239.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB034239/BDB034239.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB034239/BDB034239.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB034239/BDB034239.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component
BindingDB:BDBM686527 EC50 >10000 nM Low DOI: 10.7270/Q2V410J9 1