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US20240246935, Example 124

E3L034255
Internal ID: BDB034255
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB034255/BDB034255.sdf
Basic Properties
Compound ID
E3L034255
Internal ID
BDB034255
Molecular formula
C32H38N4O5
Molecular weight
558.679000
Exact mass
558.284220
XLogP
3.0736
TPSA
91.4200
HBA / HBD
7 / 1
Rotatable bonds
6
Heavy atoms / rings
41 / 7
Activity summary
EC50 unknown 2.00000000 nM
1 activity record(s) imported
InChIKey
XVXVSENSXBWMNM-QBGWAWDMSA-N
SMILES
O=C1CCC(N2Cc3cc(O[C@H]4CCCC[C@@H]4N4CC(c5ccc(N6CCOCC6)cc5)C4)ccc3C2=O)C(=O)N1
Aliases
BDBM686544 (preferred) US20240246935, Example 124 (source_name) BDBM686544 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon
reported_binder bindingdb_reported Yes No low BindingDB:BDBM686544 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM686544 Open - 10.7270/Q2V410J9
PubChem CID166468772 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C1CCC(N2Cc3cc(O[C@H]4CCCC[C@@H]4N4CC(c5ccc(N6CCOCC6)cc5)C4)ccc3C2=O)C(=O)N1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB034255/BDB034255.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB034255/BDB034255.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB034255/BDB034255.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB034255/BDB034255.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB034255/BDB034255.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component
BindingDB:BDBM686544 EC50 2 nM Very high DOI: 10.7270/Q2V410J9 1