< Back to small molecule database

US20240246935, Example 131

E3L034261
Internal ID: BDB034261
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB034261/BDB034261.sdf
Basic Properties
Compound ID
E3L034261
Internal ID
BDB034261
Molecular formula
C29H33N3O4
Molecular weight
487.600000
Exact mass
487.247107
XLogP
3.6271
TPSA
78.9500
HBA / HBD
5 / 1
Rotatable bonds
5
Heavy atoms / rings
36 / 6
Activity summary
EC50 unknown 11.00000000 nM
1 activity record(s) imported
InChIKey
GLHKSXCVDBGDKA-ZURQMKNRSA-N
SMILES
O=C1CCC(N2Cc3cc(O[C@H]4CCCCC[C@@H]4N4CC(c5ccccc5)C4)ccc3C2=O)C(=O)N1
Aliases
BDBM686551 (preferred) US20240246935, Example 131 (source_name) BDBM686551 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon
reported_binder bindingdb_reported Yes No low BindingDB:BDBM686551 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM686551 Open - 10.7270/Q2V410J9
PubChem CID166468965 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C1CCC(N2Cc3cc(O[C@H]4CCCCC[C@@H]4N4CC(c5ccccc5)C4)ccc3C2=O)C(=O)N1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB034261/BDB034261.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB034261/BDB034261.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB034261/BDB034261.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB034261/BDB034261.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB034261/BDB034261.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component
BindingDB:BDBM686551 EC50 11 nM High DOI: 10.7270/Q2V410J9 1