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US20240287037, Example 6

E3L034512
Internal ID: BDB034512
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB034512/BDB034512.sdf
Basic Properties
Compound ID
E3L034512
Internal ID
BDB034512
Molecular formula
C27H35N3O4
Molecular weight
465.594000
Exact mass
465.262757
XLogP
3.2596
TPSA
78.9500
HBA / HBD
5 / 1
Rotatable bonds
5
Heavy atoms / rings
34 / 6
Activity summary
EC50 unknown 5.00000000 nM
1 activity record(s) imported
InChIKey
KENDDUJFXZNYDS-OTKIHZFJSA-N
SMILES
O=C1CCC(N2Cc3cc(O[C@H]4CCCC[C@@H]4N4CC(C5CCCC5)C4)ccc3C2=O)C(=O)N1
Aliases
BDBM693792 (preferred) US20240287037, Example 6 (source_name) BDBM693792 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM693792 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM693792 Open - 10.7270/Q26W9GFG
PubChem CID166470216 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C1CCC(N2Cc3cc(O[C@H]4CCCC[C@@H]4N4CC(C5CCCC5)C4)ccc3C2=O)C(=O)N1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB034512/BDB034512.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB034512/BDB034512.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB034512/BDB034512.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB034512/BDB034512.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB034512/BDB034512.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component 		BindingDB:BDBM693792 EC50 5 nM Very high DOI: 10.7270/Q26W9GFG 1