< Back to small molecule database

US12110286, Example 20k

E3L034731
Internal ID: BDB034731
Activity data available Local docking-ready structure
Dock with P41182
Structure
/e3_file/ligand_db/generated/BDB034731/BDB034731.sdf
Basic Properties
Compound ID
E3L034731
Internal ID
BDB034731
Molecular formula
C24H30ClF3N6O3
Molecular weight
542.990000
Exact mass
542.202001
XLogP
4.2341
TPSA
97.4400
HBA / HBD
7 / 2
Rotatable bonds
6
Heavy atoms / rings
37 / 4
Activity summary
IC50 unknown 776.00000000 nM
1 activity record(s) imported
InChIKey
QPCPQBPGLWDMOB-UHFFFAOYSA-N
SMILES
Cn1c(=O)n(CCC(C)(C)O)c2cc(Nc3nc(N4CC(C(F)(F)F)OC(C)(C)C4)ncc3Cl)ccc21
Aliases
BDBM699575 (preferred) US12110286, Example 20k (source_name) BDBM699575 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P41182 BCL6;BCL5;LAZ3;ZBTB27;ZNF51
B-cell lymphoma 6 protein
reported_binder bindingdb_reported Yes No low BindingDB:BDBM699575 medium
; target=B-cell lymphoma 6 protein
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM699575 Open - 10.7270/Q2M049Z0
PubChem CID135386307 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cn1c(=O)n(CCC(C)(C)O)c2cc(Nc3nc(N4CC(C(F)(F)F)OC(C)(C)C4)ncc3Cl)ccc21 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB034731/BDB034731.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB034731/BDB034731.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB034731/BDB034731.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB034731/BDB034731.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB034731/BDB034731.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
B-cell lymphoma 6 protein
P41182
E3 ligase component
BindingDB:BDBM699575 IC50 776 nM Moderate DOI: 10.7270/Q2M049Z0 1