< Back to small molecule database

US20240365736, Example 16

E3L034949
Internal ID: BDB034949
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB034949/BDB034949.sdf
Basic Properties
Compound ID
E3L034949
Internal ID
BDB034949
Molecular formula
C31H37N3O6
Molecular weight
547.652000
Exact mass
547.268236
XLogP
3.2343
TPSA
105.2500
HBA / HBD
7 / 1
Rotatable bonds
11
Heavy atoms / rings
40 / 5
Activity summary
Kd unknown 550.00000000 nM
1 activity record(s) imported
InChIKey
QTJKSTLCSWRPHO-UHFFFAOYSA-N
SMILES
COCCCC(=O)C1CCN(Cc2ccc(COc3cccc4c3CN(C3CCC(=O)NC3=O)C4=O)cc2)CC1
Aliases
BDBM702902 (preferred) US20240365736, Example 16 (source_name) BDBM702902 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon
reported_binder bindingdb_reported Yes No low BindingDB:BDBM702902 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM702902 Open - 10.7270/Q2QF8ZC5
PubChem CID172878913 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready COCCCC(=O)C1CCN(Cc2ccc(COc3cccc4c3CN(C3CCC(=O)NC3=O)C4=O)cc2)CC1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB034949/BDB034949.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB034949/BDB034949.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB034949/BDB034949.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB034949/BDB034949.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB034949/BDB034949.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component
BindingDB:BDBM702902 Kd 550 nM Moderate DOI: 10.7270/Q2QF8ZC5 1