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US20240365736, Example 20

E3L034951
Internal ID: BDB034951
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB034951/BDB034951.sdf
Basic Properties
Compound ID
E3L034951
Internal ID
BDB034951
Molecular formula
C30H37N3O6
Molecular weight
535.641000
Exact mass
535.268236
XLogP
2.9016
TPSA
97.4100
HBA / HBD
7 / 1
Rotatable bonds
11
Heavy atoms / rings
39 / 5
Activity summary
Kd unknown 550.00000000 nM
1 activity record(s) imported
InChIKey
VUUXCYIPKCHKFI-UHFFFAOYSA-N
SMILES
COCCOCC1CCN(Cc2ccc(COc3cccc4c3CN(C3CCC(=O)NC3=O)C4=O)cc2)CC1
Aliases
BDBM702904 (preferred) US20240365736, Example 20 (source_name) BDBM702904 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon
reported_binder bindingdb_reported Yes No low BindingDB:BDBM702904 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM702904 Open - 10.7270/Q2QF8ZC5
PubChem CID172496070 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready COCCOCC1CCN(Cc2ccc(COc3cccc4c3CN(C3CCC(=O)NC3=O)C4=O)cc2)CC1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB034951/BDB034951.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB034951/BDB034951.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB034951/BDB034951.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB034951/BDB034951.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB034951/BDB034951.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component
BindingDB:BDBM702904 Kd 550 nM Moderate DOI: 10.7270/Q2QF8ZC5 1