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US20240365736, Example 21

E3L034952
Internal ID: BDB034952
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB034952/BDB034952.sdf
Basic Properties
Compound ID
E3L034952
Internal ID
BDB034952
Molecular formula
C28H33N3O7
Molecular weight
523.586000
Exact mass
523.231850
XLogP
1.8840
TPSA
106.6400
HBA / HBD
8 / 1
Rotatable bonds
10
Heavy atoms / rings
38 / 5
Activity summary
Kd < 100.00000000 nM
1 activity record(s) imported
InChIKey
PJBNYZZSTZBBMG-UHFFFAOYSA-N
SMILES
COCCOc1cc(OCc2ccc(CN3CCOCC3)cc2)c2c(c1)C(=O)N(C1CCC(=O)NC1=O)C2
Aliases
BDBM702905 (preferred) US20240365736, Example 21 (source_name) BDBM702905 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon
reported_binder bindingdb_reported Yes No low BindingDB:BDBM702905 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM702905 Open - 10.7270/Q2QF8ZC5
PubChem CID172496084 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready COCCOc1cc(OCc2ccc(CN3CCOCC3)cc2)c2c(c1)C(=O)N(C1CCC(=O)NC1=O)C2 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB034952/BDB034952.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB034952/BDB034952.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB034952/BDB034952.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB034952/BDB034952.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB034952/BDB034952.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component
BindingDB:BDBM702905 Kd <100 nM High DOI: 10.7270/Q2QF8ZC5 1