< Back to small molecule database

US20240368153, Example 3-2

E3L034975
Internal ID: BDB034975
Activity data available Local docking-ready structure
Dock with Q9BQA1
Structure
/e3_file/ligand_db/generated/BDB034975/BDB034975.sdf
Basic Properties
Compound ID
E3L034975
Internal ID
BDB034975
Molecular formula
C15H12FN3O
Molecular weight
269.279000
Exact mass
269.096440
XLogP
3.4518
TPSA
61.0300
HBA / HBD
4 / 1
Rotatable bonds
2
Heavy atoms / rings
20 / 3
Activity summary
IC50 unknown 5110.00000000 nM
1 activity record(s) imported
InChIKey
ZQVRDNFUUPUOBT-UHFFFAOYSA-N
SMILES
Cc1cc(N)nc2cc(Oc3ccccc3F)cnc12
Aliases
BDBM703902 (preferred) US20240368153, Example 3-2 (source_name) BDBM703902 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q9BQA1 WDR77;MEP50;WD45;HKMT1069;Nbla10071
Methylosome protein WDR77		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM703902 medium
; target=Protein arginine N-methyltransferase 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM703902 Open - 10.7270/Q2S75MVQ
PubChem CID172487110 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cc1cc(N)nc2cc(Oc3ccccc3F)cnc12 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB034975/BDB034975.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB034975/BDB034975.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB034975/BDB034975.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB034975/BDB034975.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB034975/BDB034975.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein arginine N-methyltransferase 5
Q9BQA1
E3 ligase component 		BindingDB:BDBM703902 IC50 5110 nM Low DOI: 10.7270/Q2S75MVQ 1