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US20240368153, Example 8-1

E3L035000
Internal ID: BDB035000
Activity data available Local docking-ready structure
Dock with Q9BQA1
Structure
/e3_file/ligand_db/generated/BDB035000/BDB035000.sdf
Basic Properties
Compound ID
E3L035000
Internal ID
BDB035000
Molecular formula
C15H13BrN4O
Molecular weight
345.200000
Exact mass
344.027273
XLogP
2.8376
TPSA
83.8000
HBA / HBD
3 / 3
Rotatable bonds
3
Heavy atoms / rings
21 / 3
Activity summary
Kd unknown 5.00000000 nM
5 activity record(s) imported
InChIKey
PFJAROFBNFXXIE-UHFFFAOYSA-N
SMILES
Nc1nc2cc(CNC(=O)c3ccccc3)[nH]c2cc1Br
Aliases
BDBM703927 (preferred) US20240368153, Example 8-1 (source_name) BDBM703927 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q9BQA1 WDR77;MEP50;WD45;HKMT1069;Nbla10071
Methylosome protein WDR77		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM703927 medium
; target=Protein arginine N-methyltransferase 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM703927 Open - 10.7270/Q2S75MVQ
PubChem CID172487063 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Nc1nc2cc(CNC(=O)c3ccccc3)[nH]c2cc1Br keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB035000/BDB035000.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB035000/BDB035000.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB035000/BDB035000.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB035000/BDB035000.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB035000/BDB035000.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein arginine N-methyltransferase 5
Q9BQA1
E3 ligase component 		BindingDB:BDBM703927 IC50 9 nM Very high DOI: 10.7270/Q2S75MVQ 1
Protein arginine N-methyltransferase 5
Q9BQA1
E3 ligase component 		BindingDB:BDBM703927 IC50 4290 nM Low DOI: 10.7270/Q2S75MVQ 1
Protein arginine N-methyltransferase 5
Q9BQA1
E3 ligase component 		BindingDB:BDBM703927 IC50 419 nM Moderate DOI: 10.7270/Q2S75MVQ 1
Protein arginine N-methyltransferase 5
Q9BQA1
E3 ligase component 		BindingDB:BDBM703927 Kd 5 nM Very high DOI: 10.7270/Q2S75MVQ 1
Protein arginine N-methyltransferase 5
Q9BQA1
E3 ligase component 		BindingDB:BDBM703927 Kd 33 nM High DOI: 10.7270/Q2S75MVQ 1