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US20240368153, Example 13-4

E3L035016
Internal ID: BDB035016
Activity data available Local docking-ready structure
Dock with Q9BQA1
Structure
/e3_file/ligand_db/generated/BDB035016/BDB035016.sdf
Basic Properties
Compound ID
E3L035016
Internal ID
BDB035016
Molecular formula
C12H13N5O2
Molecular weight
259.269000
Exact mass
259.106925
XLogP
0.8519
TPSA
95.3200
HBA / HBD
4 / 2
Rotatable bonds
1
Heavy atoms / rings
19 / 3
Activity summary
Kd unknown 10700.00000000 nM
5 activity record(s) imported
InChIKey
ORWCOAICGIORGO-UHFFFAOYSA-N
SMILES
Cc1cc2[nH]c(N3CC(=O)N(C)C3=O)cc2nc1N
Aliases
BDBM703943 (preferred) US20240368153, Example 13-4 (source_name) BDBM703943 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q9BQA1 WDR77;MEP50;WD45;HKMT1069;Nbla10071
Methylosome protein WDR77		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM703943 medium
; target=Protein arginine N-methyltransferase 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM703943 Open - 10.7270/Q2S75MVQ
PubChem CID166460426 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cc1cc2[nH]c(N3CC(=O)N(C)C3=O)cc2nc1N keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB035016/BDB035016.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB035016/BDB035016.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB035016/BDB035016.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB035016/BDB035016.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB035016/BDB035016.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein arginine N-methyltransferase 5
Q9BQA1
E3 ligase component 		BindingDB:BDBM703943 IC50 50624 nM Low DOI: 10.7270/Q2S75MVQ 1
Protein arginine N-methyltransferase 5
Q9BQA1
E3 ligase component 		BindingDB:BDBM703943 IC50 >300000 nM Low DOI: 10.7270/Q2S75MVQ 2 source records
Protein arginine N-methyltransferase 5
Q9BQA1
E3 ligase component 		BindingDB:BDBM703943 Kd 30900 nM Low DOI: 10.7270/Q2S75MVQ 1
Protein arginine N-methyltransferase 5
Q9BQA1
E3 ligase component 		BindingDB:BDBM703943 Kd 10700 nM Low DOI: 10.7270/Q2S75MVQ 1