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US20240368153, Example 14-6

E3L035025
Internal ID: BDB035025
Activity data available Local docking-ready structure
Dock with Q9BQA1
Structure
/e3_file/ligand_db/generated/BDB035025/BDB035025.sdf
Basic Properties
Compound ID
E3L035025
Internal ID
BDB035025
Molecular formula
C18H18N4O
Molecular weight
306.369000
Exact mass
306.148061
XLogP
2.6520
TPSA
75.0100
HBA / HBD
3 / 2
Rotatable bonds
2
Heavy atoms / rings
23 / 4
Activity summary
Kd unknown 1.00000000 nM
5 activity record(s) imported
InChIKey
CJVPMAFUDRCSAN-UHFFFAOYSA-N
SMILES
Cc1cc2[nH]c(CN3CCc4ccccc4C3=O)cc2nc1N
Aliases
BDBM703952 (preferred) US20240368153, Example 14-6 (source_name) BDBM703952 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q9BQA1 WDR77;MEP50;WD45;HKMT1069;Nbla10071
Methylosome protein WDR77		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM703952 medium
; target=Protein arginine N-methyltransferase 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM703952 Open - 10.7270/Q2S75MVQ
PubChem CID166460492 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cc1cc2[nH]c(CN3CCc4ccccc4C3=O)cc2nc1N keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB035025/BDB035025.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB035025/BDB035025.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB035025/BDB035025.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB035025/BDB035025.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB035025/BDB035025.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein arginine N-methyltransferase 5
Q9BQA1
E3 ligase component 		BindingDB:BDBM703952 IC50 43200 nM Low DOI: 10.7270/Q2S75MVQ 1
Protein arginine N-methyltransferase 5
Q9BQA1
E3 ligase component 		BindingDB:BDBM703952 IC50 504 nM Moderate DOI: 10.7270/Q2S75MVQ 1
Protein arginine N-methyltransferase 5
Q9BQA1
E3 ligase component 		BindingDB:BDBM703952 IC50 7 nM Very high DOI: 10.7270/Q2S75MVQ 1
Protein arginine N-methyltransferase 5
Q9BQA1
E3 ligase component 		BindingDB:BDBM703952 Kd 1 nM Very high DOI: 10.7270/Q2S75MVQ 1
Protein arginine N-methyltransferase 5
Q9BQA1
E3 ligase component 		BindingDB:BDBM703952 Kd 6 nM Very high DOI: 10.7270/Q2S75MVQ 1